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Found 2878 results for class "Germline". Showing entries 1-20.

Graph Cluster Transcripts Mean logCPM Classification Smed/Human type Human gene Annotation
1. MligTC39-572.13499 Mlig023254.g27, Mlig023254.g20 10.96

 Int S/G2/M 

 Germline 

 S/G2/M, no gonads 

X1 HSP90AA1

Mlig023254.g27 {REF} {Length: 2963} {Pfam: Hsp90 protein [PF00183.18, score=764.6]; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase [PF02518.26, score=56.1]; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase [PF13589.6, score=40.3]} {Human: ENSG00000080824, HSP90AA1, heat shock protein 90 alpha family class A member 1, [RH, Score=1062, Expect=0.0]; ENSG00000096384, HSP90AB1, heat shock protein 90 alpha family class B member 1, [RH, Score=1046, Expect=0.0]} {Mouse: ENSMUSG00000021270, Hsp90aa1, heat shock protein 90, alpha (cytosolic), class A member 1, [RH, Score=1075, Expect=0.0]; ENSMUSG00000023944, Hsp90ab1, heat shock protein 90 alpha (cytosolic), class B member 1, [RH, Score=1051, Expect=0.0]} {Dmel: FBgn0001233, Hsp83, Heat shock protein 83, [RH, Score=1090, Expect=0.0]} {Celegans: WBGene00000915, daf-21, Heat shock protein 90, [RH, Score=1023, Expect=0.0]} {Smed: dd_Smed_v6_56_0_2, dd_Smed_v6_56_0_2, [RH, Score=1120, Expect=0.0]} {Ipul: Ipul004370.g2, Ipul004370.g2, [RH, Score=1033, Expect=0.0]} {RNA1509_32} {SMEDTYPE: X1 [raj_facs_types]}

Mlig023254.g20 {REF} {Length: 3146} {Pfam: Hsp90 protein [PF00183.18, score=778.3]; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase [PF02518.26, score=47.3]; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase [PF13589.6, score=29.4]} {Human: ENSG00000080824, HSP90AA1, heat shock protein 90 alpha family class A member 1, [RH, Score=1033, Expect=0.0]; ENSG00000096384, HSP90AB1, heat shock protein 90 alpha family class B member 1, [RH, Score=1018, Expect=0.0]} {Mouse: ENSMUSG00000021270, Hsp90aa1, heat shock protein 90, alpha (cytosolic), class A member 1, [RH, Score=1047, Expect=0.0]; ENSMUSG00000023944, Hsp90ab1, heat shock protein 90 alpha (cytosolic), class B member 1, [RH, Score=1023, Expect=0.0]} {Dmel: FBgn0001233, Hsp83, Heat shock protein 83, [RH, Score=1062, Expect=0.0]} {Celegans: WBGene00000915, daf-21, Heat shock protein 90, [RH, Score=994, Expect=0.0]} {Smed: dd_Smed_v6_56_0_2, dd_Smed_v6_56_0_2, [Score=1088, Expect=0.0]} {Ipul: Ipul004370.g2, Ipul004370.g2, [RH, Score=1002, Expect=0.0]} {RNA1509_125, RNA1509_806, RNA1509_874} {SMEDTYPE: X1 [raj_facs_types]}
2. MligTC39-572.30247 Mlig030334.g14 9.27

 Irradiation 

 Int S/G2/M 

 Germline 

Mlig030334.g14 {REF} {Length: 1364} {RNA1509_12334, RNA1509_14264, RNA1509_16104}
3. MligTC39-572.27798 Mlig001691.g1 8.87

 Irradiation 

 Int S/G2/M 

 Germline 

WBP2NL Mlig001691.g1 {REF} {Length: 1779} {Human: ENSG00000183066, WBP2NL, WBP2 N-terminal like, [RH, Score=54.3, Expect=4e-08]} {Mouse: ENSMUSG00000022455, Wbp2nl, WBP2 N-terminal like, [Score=58.2, Expect=4e-09]} {RNA1509_11504, RNA1509_1402, RNA1509_1798, RNA1509_18815, RNA1509_19310, RNA1509_19876, RNA1509_2116, RNA1509_2178, RNA1509_23484, RNA1509_33453, RNA1509_3933, RNA1509_4048, RNA1509_4521, RNA1509_47, RNA1509_48758, RNA1509_51669, RNA1509_517, RNA1509_52628, RNA1509_7956}
4. MligTC39-572.32826 Mlig039975.g1 8.48

 Int S/G2/M 

 Germline 

 S/G2/M, no gonads 

Neoblast; X1; Sexual_biased PABPC4 Mlig039975.g1 {REF} {Length: 6373} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.22, score=281.2]; Poly-adenylate binding protein, unique domain [PF00658.18, score=106.5]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF13893.6, score=41.7]; Nup53/35/40-type RNA recognition motif [PF14605.6, score=33.7]; RNA binding motif [PF08777.11, score=24.9]; Protein of unknown function (DUF4523) [PF15023.6, score=22.9]; RNA recognition motif [PF16367.5, score=22.5]; Occluded RNA-recognition motif [PF16842.5, score=19.1]} {Human: ENSG00000090621, PABPC4, poly(A) binding protein cytoplasmic 4, [RH, Score=737, Expect=0.0]; ENSG00000070756, PABPC1, poly(A) binding protein cytoplasmic 1, [RH, Score=717, Expect=0.0]} {Mouse: ENSMUSG00000011257, Pabpc4, poly(A) binding protein, cytoplasmic 4, [RH, Score=729, Expect=0.0]; ENSMUSG00000022283, Pabpc1, poly(A) binding protein, cytoplasmic 1, [RH, Score=718, Expect=0.0]} {Dmel: FBgn0265297, pAbp, poly(A) binding protein, [RH, Score=669, Expect=0.0]} {Celegans: WBGene00003902, pab-1, Polyadenylate-binding protein, [RH, Score=665, Expect=0.0]} {Smed: dd_Smed_v6_11729_0_1, dd_Smed_v6_11729_0_1, [RH, Score=725, Expect=0.0]} {Ipul: Ipul008508.g1, Ipul008508.g1, [RH, Score=584, Expect=0.0]} {RNA1509_114} {SMEDTYPE: Neoblast [dd_Smed_v6_11729_0_1, cytoplasmic poly(A) binding protein (PABPC)]} {SMEDTYPE: X1 [raj_facs_types]} {SMEDTYPE: Sexual_biased [CUFF.36071.0]}
5. MligTC39-572.8002 Mlig032789.g3, Mlig032789.g1 8.46

 Irradiation 

 Int S/G2/M 

 Germline 

X1 DDX6

Mlig032789.g3 {REF} {Length: 3244} {TRANSSPLICED} {Pfam: Helicase conserved C-terminal domain [PF00271.31, score=37.1]} {Human: ENSG00000110367, DDX6, DEAD-box helicase 6, [Score=137, Expect=8e-38]} {Mouse: ENSMUSG00000032097, Ddx6, DEAD (Asp-Glu-Ala-Asp) box polypeptide 6, [Score=137, Expect=3e-38]} {Dmel: FBgn0004419, me31B, maternal expression at 31B, [Score=125, Expect=4e-34]} {Celegans: WBGene00000479, cgh-1, ATP-dependent RNA helicase cgh-1, [Score=125, Expect=5e-34]} {Smed: dd_Smed_v6_1034_0_1, dd_Smed_v6_1034_0_1, [Score=175, Expect=2e-52]} {Ipul: Ipul002558.g1, Ipul002558.g1, [Score=123, Expect=2e-33]} {RNA1509_1529, RNA1509_2093, RNA1509_85} {SMEDTYPE: X1 [raj_facs_types]}

Mlig032789.g1 {REF} {Length: 3557} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.29, score=147.1]; Helicase conserved C-terminal domain [PF00271.31, score=98.2]} {Human: ENSG00000110367, DDX6, DEAD-box helicase 6, [RH, Score=659, Expect=0.0]} {Mouse: ENSMUSG00000032097, Ddx6, DEAD (Asp-Glu-Ala-Asp) box polypeptide 6, [RH, Score=659, Expect=0.0]} {Dmel: FBgn0004419, me31B, maternal expression at 31B, [RH, Score=651, Expect=0.0]} {Celegans: WBGene00000479, cgh-1, ATP-dependent RNA helicase cgh-1, [RH, Score=641, Expect=0.0]} {Smed: dd_Smed_v6_1034_0_1, dd_Smed_v6_1034_0_1, [RH, Score=701, Expect=0.0]} {Ipul: Ipul002558.g1, Ipul002558.g1, [RH, Score=586, Expect=0.0]} {RNA1509_1529, RNA1509_6078} {SMEDTYPE: X1 [raj_facs_types]}
6. MligTC39-572.27797 Mlig002860.g3 8.26

 Irradiation 

 Int S/G2/M 

 Germline 

WBP2NL Mlig002860.g3 {REF} {Length: 1361} {Human: ENSG00000183066, WBP2NL, WBP2 N-terminal like, [RH, Score=54.3, Expect=4e-08]} {Mouse: ENSMUSG00000022455, Wbp2nl, WBP2 N-terminal like, [Score=57.8, Expect=3e-09]} {RNA1509_1905, RNA1509_34889, RNA1509_35467, RNA1509_4315, RNA1509_47, RNA1509_48, RNA1509_48578}
7. MligTC39-572.11404 Mlig004264.g6 8.24

 Int S/G2/M 

 Germline 

Xins; Sexual_biased CALR Mlig004264.g6 {REF} {Length: 2459} {Pfam: Calreticulin family [PF00262.18, score=289.7]} {Human: ENSG00000179218, CALR, calreticulin, [RH, Score=499, Expect=1e-176]} {Mouse: ENSMUSG00000003814, Calr, calreticulin, [RH, Score=499, Expect=1e-176]} {Dmel: FBgn0005585, Calr, Calreticulin, [RH, Score=494, Expect=1e-174]} {Celegans: WBGene00000802, crt-1, Calreticulin, [RH, Score=474, Expect=2e-167]} {Smed: dd_Smed_v6_220_0_4, dd_Smed_v6_220_0_4, [RH, Score=556, Expect=0.0]} {Ipul: Ipul010647.g4, Ipul010647.g4, [RH, Score=532, Expect=0.0]} {RNA1509_145, RNA1509_1668} {SMEDTYPE: Xins [raj_facs_types]} {SMEDTYPE: Sexual_biased [CUFF.88366.0]}
8. MligTC39-572.8418 Mlig002896.g9 7.9

 Irradiation 

 Int S/G2/M 

 Germline 

Mlig002896.g9 {REF} {Length: 2354} {RNA1509_42}
9. MligTC39-572.3213 Mlig011389.g1 7.86

 Int S/G2/M 

 Germline 

Mlig011389.g1 {REF} {Length: 1065} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_1575, RNA1509_2339}
10. MligTC39-572.33265 Mlig033002.g3 7.77

 Irradiation 

 Int S/G2/M 

 Germline 

Mlig033002.g3 {REF} {Length: 1061} {Pfam: Protein of unknown function (DUF1180) [PF06679.12, score=18.9]} {RNA1509_1627, RNA1509_17718, RNA1509_1781, RNA1509_26294, RNA1509_39435, RNA1509_4375, RNA1509_52804, RNA1509_55449, RNA1509_5645, RNA1509_8024}
11. MligTC39-572.29623 Mlig002525.g4 7.7

 Irradiation 

 Int S/G2/M 

 Germline 

Mlig002525.g4 {REF} {Length: 807} {RNA1509_260, RNA1509_2865, RNA1509_361, RNA1509_51339, RNA1509_6783}
12. MligTC39-572.29622 Mlig070610.g1 7.59

 Irradiation 

 Int S/G2/M 

 Germline 

Mlig070610.g1 {REF} {Length: 3870} {RNA1509_16634, RNA1509_24230, RNA1509_32167, RNA1509_36542, RNA1509_3936, RNA1509_59}
13. MligTC39-572.30226 Mlig013858.g4 7.59

 Irradiation 

 Int S/G2/M 

 Germline 

Mlig013858.g4 {REF} {Length: 4419} {RNA1509_13162, RNA1509_23832, RNA1509_26851, RNA1509_36928, RNA1509_45835, RNA1509_5941}
14. MligTC39-572.27180 Mlig011676.g1 7.59

 Irradiation 

 Int S/G2/M 

 Germline 

X1; self-renewal TUBB Mlig011676.g1 {REF} {Length: 1965} {Pfam: Tubulin/FtsZ family, GTPase domain [PF00091.25, score=227.9]; Tubulin C-terminal domain [PF03953.17, score=147.5]; Misato Segment II tubulin-like domain [PF10644.9, score=24.5]} {Human: ENSG00000183311, TUBB, tubulin beta class I, [Score=766, Expect=0.0]; ENSG00000196230, TUBB, tubulin beta class I, [Score=766, Expect=0.0]; ENSG00000258947, TUBB3, tubulin beta 3 class III, [Score=766, Expect=0.0]; ENSG00000232421, TUBB, tubulin beta class I, [Score=766, Expect=0.0]; ENSG00000224156, TUBB, tubulin beta class I, [Score=766, Expect=0.0]; ENSG00000227739, TUBB, tubulin beta class I, [Score=766, Expect=0.0]; ENSG00000235067, TUBB, tubulin beta class I, [Score=766, Expect=0.0]; ENSG00000232575, TUBB, tubulin beta class I, [Score=766, Expect=0.0]; ENSG00000229684, TUBB, tubulin beta class I, [Score=766, Expect=0.0]; ENSG00000137285, TUBB2B, tubulin beta 2B class IIb, [Score=764, Expect=0.0]; ENSG00000188229, TUBB4B, tubulin beta 4B class IVb, [Score=764, Expect=0.0]; ENSG00000137267, TUBB2A, tubulin beta 2A class IIa, [Score=759, Expect=0.0]; ENSG00000104833, TUBB4A, tubulin beta 4A class IVa, [Score=756, Expect=0.0]; ENSG00000176014, TUBB6, tubulin beta 6 class V, [Score=731, Expect=0.0]; ENSG00000198211, AC092143.1, novel protein (MC1R-TUBB3 readthrough), [Score=730, Expect=0.0]; ENSG00000261456, TUBB8, tubulin beta 8 class VIII, [Score=728, Expect=0.0]} {Mouse: ENSMUSG00000001525, Tubb5, tubulin, beta 5 class I, [Score=766, Expect=0.0]; ENSMUSG00000062380, Tubb3, tubulin, beta 3 class III, [Score=764, Expect=0.0]; ENSMUSG00000036752, Tubb4b, tubulin, beta 4B class IVB, [Score=764, Expect=0.0]; ENSMUSG00000045136, Tubb2b, tubulin, beta 2B class IIB, [Score=764, Expect=0.0]; ENSMUSG00000058672, Tubb2a, tubulin, beta 2A class IIA, [Score=759, Expect=0.0]; ENSMUSG00000062591, Tubb4a, tubulin, beta 4A class IVA, [Score=756, Expect=0.0]; ENSMUSG00000001473, Tubb6, tubulin, beta 6 class V, [Score=731, Expect=0.0]} {Dmel: FBgn0003890, betaTub97EF, beta-Tubulin at 97EF, [Score=733, Expect=0.0]} {Celegans: WBGene00003171, mec-7, Tubulin beta-1 chain, [Score=737, Expect=0.0]} {Smed: dd_Smed_v6_83_0_3, dd_Smed_v6_83_0_3, [Score=771, Expect=0.0]} {Ipul: Ipul034442.g7, Ipul034442.g7, [Score=765, Expect=0.0]} {RNA1509_44} {SMEDTYPE: X1 [raj_facs_types]} {SMEDTYPE: self-renewal [4]}
15. MligTC39-572.10211 Mlig004676.g1 7.5

 Irradiation 

 Int S/G2/M 

 Germline 

Mlig004676.g1 {REF} {Length: 1201} {RNA1509_10915, RNA1509_18604, RNA1509_224, RNA1509_37802, RNA1509_387, RNA1509_39435, RNA1509_8243}
16. MligTC39-572.3212 Mlig011389.g6 7.49

 Int S/G2/M 

 Germline 

Mlig011389.g6 {REF} {Length: 1064} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_70}
17. MligTC39-572.8416 Mlig020807.g3 7.42

 Irradiation 

 Int S/G2/M 

 Germline 

Epidermis I; Xins; Asexual_biased Mlig020807.g3 {REF} {Length: 2296} {Pfam: Immunoglobulin domain [PF13927.6, score=49.7]; Immunoglobulin I-set domain [PF07679.16, score=45.9]; Immunoglobulin domain [PF13895.6, score=34.3]; Immunoglobulin V-set domain [PF07686.17, score=28.5]; Immunoglobulin domain [PF00047.25, score=26.6]} {Smed: dd_Smed_v6_2673_0_1, dd_Smed_v6_2673_0_1, [Score=65.9, Expect=5e-11]} {RNA1509_15245, RNA1509_3600, RNA1509_390, RNA1509_42} {SMEDTYPE: Epidermis I [dd_Smed_v6_2673_0_1, contactin 2 (axonal) (CNTN2)]} {SMEDTYPE: Xins [raj_facs_types]} {SMEDTYPE: Asexual_biased [CUFF.293672.0]}
18. MligTC39-572.5406 Mlig008783.g2 7.26

 Irradiation 

 Int S/G2/M 

 Germline 

Gut; Testis TUBA1C Mlig008783.g2 {REF} {Length: 2373} {Pfam: Tubulin/FtsZ family, GTPase domain [PF00091.25, score=222.1]; Tubulin C-terminal domain [PF03953.17, score=170.1]} {Human: ENSG00000167553, TUBA1C, tubulin alpha 1c, [Score=732, Expect=0.0]; ENSG00000123416, TUBA1B, tubulin alpha 1b, [Score=730, Expect=0.0]; ENSG00000075886, TUBA3D, tubulin alpha 3d, [Score=728, Expect=0.0]; ENSG00000167552, TUBA1A, tubulin alpha 1a, [Score=728, Expect=0.0]; ENSG00000198033, TUBA3C, tubulin alpha 3c, [Score=728, Expect=0.0]; ENSG00000127824, TUBA4A, tubulin alpha 4a, [Score=721, Expect=0.0]; ENSG00000152086, TUBA3E, tubulin alpha 3e, [Score=717, Expect=0.0]; ENSG00000183785, TUBA8, tubulin alpha 8, [Score=709, Expect=0.0]} {Mouse: ENSMUSG00000043091, Tuba1c, tubulin, alpha 1C, [Score=732, Expect=0.0]; ENSMUSG00000023004, Tuba1b, tubulin, alpha 1B, [Score=730, Expect=0.0]; ENSMUSG00000067338, Tuba3b, tubulin, alpha 3B, [Score=728, Expect=0.0]; ENSMUSG00000072235, Tuba1a, tubulin, alpha 1A, [Score=728, Expect=0.0]; ENSMUSG00000067702, Tuba3a, tubulin, alpha 3A, [Score=728, Expect=0.0]; ENSMUSG00000026202, Tuba4a, tubulin, alpha 4A, [Score=721, Expect=0.0]; ENSMUSG00000030137, Tuba8, tubulin, alpha 8, [Score=706, Expect=0.0]} {Dmel: FBgn0003885, alphaTub84D, alpha-Tubulin at 84D, [Score=719, Expect=0.0]} {Celegans: WBGene00006535, tba-9, Tubulin alpha chain, [Score=692, Expect=0.0]} {Smed: dd_Smed_v6_10947_0_1, dd_Smed_v6_10947_0_1, [Score=707, Expect=0.0]} {Ipul: Ipul001013.g2, Ipul001013.g2, [Score=719, Expect=0.0]} {RNA1509_107, RNA1509_11579, RNA1509_1629, RNA1509_566} {SMEDTYPE: Gut [dd_Smed_v6_10947_0_1, tubulin, alpha 3d (TUBA3D)]} {SMEDTYPE: Testis [Contig7537_SE3]}
19. MligTC39-572.1655 Mlig014003.g6, Mlig014003.g4 7.16

 Irradiation 

 Int S/G2/M 

 Germline 

X1 LSM14A

Mlig014003.g6 {REF} {Length: 3446} {Pfam: Scd6-like Sm domain [PF12701.7, score=93.8]; Ataxin 2 SM domain [PF14438.6, score=29.0]} {Human: ENSG00000257103, LSM14A, LSM14A, mRNA processing body assembly factor, [Score=120, Expect=1e-29]; ENSG00000262860, LSM14A, LSM14A, mRNA processing body assembly factor, [Score=120, Expect=1e-29]; ENSG00000149657, LSM14B, LSM family member 14B, [Score=114, Expect=2e-28]} {Mouse: ENSMUSG00000066568, Lsm14a, LSM14A mRNA processing body assembly factor, [Score=118, Expect=5e-29]} {Dmel: FBgn0041775, tral, trailer hitch, [RH, Score=103, Expect=2e-23]} {Celegans: WBGene00012484, car-1, Cytokinesis, Apoptosis, RNA-associated, [Score=112, Expect=1e-27]} {Smed: dd_Smed_v6_1125_0_1, dd_Smed_v6_1125_0_1, [Score=117, Expect=6e-29]} {Ipul: Ipul034369.g1, Ipul034369.g1, [Score=112, Expect=6e-27]} {RNA1509_1224, RNA1509_244, RNA1509_24782, RNA1509_40925} {SMEDTYPE: X1 [raj_facs_types]}

Mlig014003.g4 {REF} {Length: 3278} {Pfam: Scd6-like Sm domain [PF12701.7, score=92.9]; Ataxin 2 SM domain [PF14438.6, score=28.2]; Transcription factor IIA, alpha/beta subunit [PF03153.13, score=22.3]} {Human: ENSG00000262860, LSM14A, LSM14A, mRNA processing body assembly factor, [Score=121, Expect=5e-29]; ENSG00000257103, LSM14A, LSM14A, mRNA processing body assembly factor, [Score=121, Expect=5e-29]; ENSG00000149657, LSM14B, LSM family member 14B, [Score=115, Expect=6e-28]} {Mouse: ENSMUSG00000066568, Lsm14a, LSM14A mRNA processing body assembly factor, [Score=119, Expect=2e-28]} {Dmel: FBgn0041775, tral, trailer hitch, [RH, Score=102, Expect=2e-22]} {Celegans: WBGene00012484, car-1, Cytokinesis, Apoptosis, RNA-associated, [Score=112, Expect=5e-27]} {Smed: dd_Smed_v6_1125_0_1, dd_Smed_v6_1125_0_1, [Score=117, Expect=3e-28]} {Ipul: Ipul034369.g1, Ipul034369.g1, [Score=112, Expect=4e-26]} {RNA1509_18892, RNA1509_244, RNA1509_55470, RNA1509_6395} {SMEDTYPE: X1 [raj_facs_types]}
20. MligTC39-572.11403 Mlig004264.g2 7.1

 Int S/G2/M 

 Germline 

Xins; Sexual_biased CALR Mlig004264.g2 {REF} {Length: 2587} {Pfam: Calreticulin family [PF00262.18, score=289.7]} {Human: ENSG00000179218, CALR, calreticulin, [RH, Score=499, Expect=2e-176]} {Mouse: ENSMUSG00000003814, Calr, calreticulin, [RH, Score=500, Expect=8e-177]} {Dmel: FBgn0005585, Calr, Calreticulin, [RH, Score=494, Expect=4e-175]} {Celegans: WBGene00000802, crt-1, Calreticulin, [RH, Score=474, Expect=2e-167]} {Smed: dd_Smed_v6_220_0_4, dd_Smed_v6_220_0_4, [RH, Score=557, Expect=0.0]} {Ipul: Ipul010647.g4, Ipul010647.g4, [RH, Score=532, Expect=0.0]} {RNA1509_145, RNA1509_2053, RNA1509_2499} {SMEDTYPE: Xins [raj_facs_types]} {SMEDTYPE: Sexual_biased [CUFF.88366.0]}
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